There's a setting for that.
In v2.6 we had a setting called "HideManyOneToOneRelatedEntityPropertiesFromDatabinding". We removed that one in 3.0 in favor of our attribute and setting system. Because in fact all the setting did was emitting Browsable(false) on the navigator property.
In 3.0, we by default made these navigators hidden by applying a Browsable(false) attribute for a single-value navigator. In the designer, open project properties and go to code gen. meta-data defaults. Select 'NavigatorSingleValue' from the combo box and you'll see a Browsable() attribute definition. It's likely set to Browsable($true) in your case. If it's Browsable($false), go to the entity, open it in the editor, go to the code gen. info tab and select the navigator which is visible in the grid, and its 'Attributes' tab will have a Browsable($true) definition specified.
If you never want those to pop up, go to the project properties, code gen. meta-data defaults tab, NavigatorSingleValue and make sure Browsable($false) is specified. Then on the navigator, make sure the checkbox under 'Inherit' is checked for the navigator's Browsable($false) attribute definition in the code gen. info tab.
Then generate the code. This should give a <Browsable(False)> _ attribute on the property definitions in the entity classes which show up in the grid.